Computational Structural Biologist
University of York
Structural Biology Software Development X-ray Crystallography Data Analysis Machine Learning
Automated model-building pipeline for X-ray crystallography and cryo-EM
Interactively analyse thermal shift (DSF) data by fitting sigmoid curves
Virtual simulations of undergraduate analytical laboratory experiments
Compare anomalous scattering factors (f' and f") for different elements
Input guesses and responses to work out the true suspect, weapon and location
A simple Pomodoro timer to help focus on tasks for 25 minute periods
Introduction to evolutionary algorithms using an evolving grid of random colours
Coot Workshop
A two-part workshop to introduce interactive model building in Coot
RNA Model Building Workshop
An introduction to the model building tools available in CCP4
for nucleic acid structures
CCP4 Molecular Graphics Tutorial
A tutorial covering most of the basic features of CCP4mg
The CCP4 suite: integrative software for macromolecular crystallography
J Agirre, et al.
Acta Cryst. D, 79, 449 (2023)
ModelCraft: an advanced automated model-building pipeline using Buccaneer
P Bond, K Cowtan
Acta Cryst. D, 78, 1090 (2022)
Shift-field refinement of macromolecular atomic models
K Cowtan, S Metcalfe, P Bond
Acta Cryst. D, 76, 1192 (2020)
Predicting protein model correctness in Coot using machine learning
P Bond, K Wilson, K Cowtan
Acta Cryst. D, 76, 713 (2020)
See the full list on Google Scholar
Model Building and Density Modification
3rd Dec 2023: Diamond Light Source, UK
Overview of the Cowtan group programs
for density modification and model building in CCP4:
Parrot, Buccaneer, Nautilus and ModelCraft.
Automatic Model Building (CCP4 / CCP-EM)
9th Nov 2023: Spring-8, Japan
Overview of the automated model-building programs
available in CCP4 and CCP-EM.